BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB028B11SP1|AL428859
(787 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1369 1532 0.0
>3x_Contig1369
Length = 7461
Score = 1532 bits (772), Expect = 0.0
Identities = 786/788 (99%), Gaps = 2/788 (0%)
Strand = Plus / Minus
Query: 1 atccagaccaacgggtaacagactgggggtgatagaaagattttgttggttaagaagatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5720 atccagaccaacgggtaacagactgggggtgatagaaagattttgttggttaagaagatc 5661
Query: 61 cgtataactaattggtggtaccaacggtgtggagcctggaatgccgccttgttctgggta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5660 cgtataactaattggtggtaccaacggtgtggagcctggaatgccgccttgttctgggta 5601
Query: 121 cgagaaacaatccaccataatatgcggtgaagctacgtcgatgtacttttctatatcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5600 cgagaaacaatccaccataatatgcggtgaagctacgtcgatgtacttttctatatcttc 5541
Query: 181 atgttgcttcttgtatgtggataaaagagcgggaggttcttgttttggggggtcctggtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5540 atgttgcttcttgtatgtggataaaagagcgggaggttcttgttttggggggtcctggtc 5481
Query: 241 cggaataggaggagaaatagggcgcgaaggttccaccattggggactgaactgccatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5480 cggaataggaggagaaatagggcgcgaaggttccaccattggggactgaactgccatagg 5421
Query: 301 agtgggttctgacgtcactataggagaagctgggtttatatttgccgtggtatttaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5420 agtgggttctgacgtcactataggagaagctgggtttatatttgccgtggtatttaccag 5361
Query: 361 ttgagcaggcatgttattttgtacaagtggttgcgaa-ctgctgctactggtgattccac 419
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 5360 ttgagcaggcatgttattttgtacaagtggttgcgaagctgctgctactggtgattccac 5301
Query: 420 cttaccctttttgggttgacgaaccttctgtactggtttcttcacgccttggcgtacctg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5300 cttaccctttttgggttgacgaaccttctgtactggtttcttcacgccttggcgtacctg 5241
Query: 480 aggcgaaag-ttctgctgcggtacattattctgttgttgttgttgttgttgttgttgttg 538
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5240 aggcgaaagcttctgctgcggtacattattctgttgttgttgttgttgttgttgttgttg 5181
Query: 539 tactggaggttgcatctgctggccagcattatgagcttgtaaatcggcactcaacgccag 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5180 tactggaggttgcatctgctggccagcattatgagcttgtaaatcggcactcaacgccag 5121
Query: 599 tagaatggatttgaaatccagtaaattggtcaaagaccgatcaatgaccatcataatctc 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5120 tagaatggatttgaaatccagtaaattggtcaaagaccgatcaatgaccatcataatctc 5061
Query: 659 tggtggtacgaccatgtggttagccatcatcttaagagattggatctgtgccttcaacaa 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5060 tggtggtacgaccatgtggttagccatcatcttaagagattggatctgtgccttcaacaa 5001
Query: 719 gagcgactgttcatctgtgaacaaagaccgtgatgatgacgcgttattattattattatt 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5000 gagcgactgttcatctgtgaacaaagaccgtgatgatgacgcgttattattattattatt 4941
Query: 779 attattag 786
||||||||
Sbjct: 4940 attattag 4933
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7813
Number of Sequences: 1807
Number of extensions: 7813
Number of successful extensions: 1153
Number of sequences better than 1.0e-20: 1
length of query: 787
length of database: 10,358,551
effective HSP length: 16
effective length of query: 771
effective length of database: 10,329,639
effective search space: 7964151669
effective search space used: 7964151669
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)